Dynamics of soil bulk density, organic matter, microbial biomass, nitrogen, and nematode communities were assessed for a period of 4 years in field plots transitioning from conventional to organic farming practices. A rotation of soybeans, corn, oats and hay was used as an organic transitioning strategy and the conventional farming system had a corn and soybean rotation for comparison. Organic corn received raw straw pack beef manure and poultry compost at the rate of 27 and 28 Mg/h, respectively, and organic oats received raw straw pack beef manure and poultry compost at the rate of 18 and 1.8 Mg/h, respectively, while conventional plots received synthetic fertilizers. All crops in the organic system received primary tillage (chisel plow, disked and tined) whereas only corn received primary tillage in the conventional system but soybeans were no-till. Weed control was mechanical (twice diskings, rotary hoeings and row cultivation) in the organic system whereas herbicides were used in the conventional system. Soil bulk density did not differ in the two systems over a 4-year period but organic farming had slightly higher organic matter, mineral associated organic matter and particulate organic matter. Conventional system had more N in the mineral pools as indicated by higher NO3- -N whereas organic system had higher N in the microbial biomass indicating shifts in nitrogen pools between the two systems. Bacterivore nematodes were more abundant in the organic than the conventional system for most of the study period. In contrast, the conventional system had significantly higher populations of the root lesion nematode, Pratylenchus crenatus, than the organic system after completion of the rotation cycle (transition period) in spring 2004. The organic hay plots had the lowest populations of P. crenatus compared to corn, soybeans and oats. Nematode faunal profile estimates showed that the food webs were highly enriched and moderately to highly structured and the decomposition channels were bacterial in both systems. The lack of differences in structure index between the organic and conventional systems is probably due to the excessive tillage in the organic farming system, which may have prevented the build up of tillage-sensitive omnivorous and predatory nematodes that contribute to the structure index. We conclude that transition from conventional to organic farming can increase soil microbial biomass-N and populations of beneficial bacterivore nematodes while simultaneously reducing the populations of predominant plant-parasitic nematode, P. crenatus. Our findings also underscore the potential benefits of reducing tillage for the development of a more mature soil food web. (c) 2007 Elsevier B.V. All rights reserved.